List of all items

Structs

• prelude::AuxStorageCycle
• prelude::AuxStorageInteraction
• prelude::AuxStorageMechanics
• prelude::AuxStorageReactions
• prelude::AuxStorageReactionsContact
• prelude::BarrierSync
• prelude::BatchSaveFormat
• prelude::BoundLennardJones
• prelude::BoundLennardJonesF32
• prelude::BoundaryError
• prelude::Brownian1D
• prelude::Brownian1DF32
• prelude::Brownian2D
• prelude::Brownian2DF32
• prelude::Brownian3D
• prelude::Brownian3DF32
• prelude::CalcError
• prelude::CartesianCuboid
• prelude::CartesianCuboid1New
• prelude::CartesianCuboid1NewF32
• prelude::CartesianCuboid2New
• prelude::CartesianCuboid2NewF32
• prelude::CartesianCuboid3New
• prelude::CartesianCuboid3NewF32
• prelude::CartesianSubDomain
• prelude::CartesianSubDomain1
• prelude::CartesianSubDomain1F32
• prelude::CartesianSubDomain2
• prelude::CartesianSubDomain2F32
• prelude::CartesianSubDomain3
• prelude::CartesianSubDomain3F32
• prelude::CartesianVoxel1
• prelude::CartesianVoxel1F32
• prelude::CartesianVoxel2
• prelude::CartesianVoxel2F32
• prelude::CartesianVoxel3
• prelude::CartesianVoxel3F32
• prelude::CellAgentBox
• prelude::CellBox
• prelude::CellIdentifier
• prelude::ChannelComm
• prelude::CombinedSaveFormat
• prelude::CommunicationError
• prelude::ControllerError
• prelude::DeathError
• prelude::DecomposedDomain
• prelude::DefaultHandler
• prelude::DivisionError
• prelude::DrawingError
• prelude::FixedStepsize
• prelude::ForceInformation
• prelude::IndexError
• prelude::JsonStorageInterface
• prelude::Langevin1D
• prelude::Langevin1DF32
• prelude::Langevin2D
• prelude::Langevin2DF32
• prelude::Langevin3D
• prelude::Langevin3DF32
• prelude::MemoryStorageInterface
• prelude::MiePotential
• prelude::ModularCell
• prelude::MorsePotential
• prelude::MorsePotentialF32
• prelude::NewtonDamped1D
• prelude::NewtonDamped1DF32
• prelude::NewtonDamped2D
• prelude::NewtonDamped2DF32
• prelude::NewtonDamped3D
• prelude::NewtonDamped3DF32
• prelude::NextTimePoint
• prelude::NoCellularReactions
• prelude::NoCycle
• prelude::NoExtracellularGradientSensing
• prelude::NoInteraction
• prelude::PosInformation
• prelude::ReactionsContactInformation
• prelude::ReactionsContactReturn
• prelude::ReactionsExtraBorderInfo
• prelude::ReactionsExtraBorderReturn
• prelude::RequestError
• prelude::RingBuffer
• prelude::RingBufferIter
• prelude::RingBufferIterRef
• prelude::RngError
• prelude::RonStorageInterface
• prelude::SendCell
• prelude::Settings
• prelude::SetupError
• prelude::SimulationRunner
• prelude::SimulationSetup
• prelude::SledStorageInterface
• prelude::StorageAccess
• prelude::StorageBuilder
• prelude::StorageManager
• prelude::SubDomainBox
• prelude::SubDomainPlainIndex
• prelude::TimeError
• prelude::UDGraph
• prelude::UniqueVec
• prelude::VertexDerivedInteraction
• prelude::VertexMechanics2D
• prelude::Voxel
• prelude::VoxelPlainIndex
• prelude::XmlStorageInterface
• prelude::backend::chili::AuxStorageCycle
• prelude::backend::chili::AuxStorageInteraction
• prelude::backend::chili::AuxStorageMechanics
• prelude::backend::chili::AuxStorageReactions
• prelude::backend::chili::AuxStorageReactionsContact
• prelude::backend::chili::BarrierSync
• prelude::backend::chili::CellBox
• prelude::backend::chili::CellIdentifier
• prelude::backend::chili::ChannelComm
• prelude::backend::chili::DefaultHandler
• prelude::backend::chili::ForceInformation
• prelude::backend::chili::IndexError
• prelude::backend::chili::PosInformation
• prelude::backend::chili::ReactionsContactInformation
• prelude::backend::chili::ReactionsContactReturn
• prelude::backend::chili::ReactionsExtraBorderInfo
• prelude::backend::chili::ReactionsExtraBorderReturn
• prelude::backend::chili::RingBuffer
• prelude::backend::chili::RingBufferIter
• prelude::backend::chili::RingBufferIterRef
• prelude::backend::chili::SendCell
• prelude::backend::chili::Settings
• prelude::backend::chili::SimulationRunner
• prelude::backend::chili::SimulationSetup
• prelude::backend::chili::StorageAccess
• prelude::backend::chili::SubDomainBox
• prelude::backend::chili::SubDomainPlainIndex
• prelude::backend::chili::UDGraph
• prelude::backend::chili::Voxel
• prelude::backend::chili::VoxelPlainIndex
• prelude::backend::cpu_os_threads::AuxiliaryCellPropertyStorage
• prelude::backend::cpu_os_threads::BoundaryError
• prelude::backend::cpu_os_threads::CalcError
• prelude::backend::cpu_os_threads::CellAgentBox
• prelude::backend::cpu_os_threads::CommunicationError
• prelude::backend::cpu_os_threads::ControllerError
• prelude::backend::cpu_os_threads::DeathError
• prelude::backend::cpu_os_threads::DecomposedDomain
• prelude::backend::cpu_os_threads::DivisionError
• prelude::backend::cpu_os_threads::DomainBox
• prelude::backend::cpu_os_threads::DrawingError
• prelude::backend::cpu_os_threads::IndexError
• prelude::backend::cpu_os_threads::MultiVoxelContainer
• prelude::backend::cpu_os_threads::PlottingConfig
• prelude::backend::cpu_os_threads::RequestError
• prelude::backend::cpu_os_threads::RngError
• prelude::backend::cpu_os_threads::SetupError
• prelude::backend::cpu_os_threads::SimulationConfig
• prelude::backend::cpu_os_threads::SimulationMetaParams
• prelude::backend::cpu_os_threads::SimulationResult
• prelude::backend::cpu_os_threads::SimulationSetup
• prelude::backend::cpu_os_threads::SimulationSupervisor
• prelude::backend::cpu_os_threads::Strategies
• prelude::backend::cpu_os_threads::TimeError
• prelude::backend::cpu_os_threads::TimeSetup
• prelude::backend::cpu_os_threads::VoxelBox
• prelude::cartesian_cuboid_2_vertex_old::CartesianCuboid2Vertex
• prelude::cartesian_cuboid_2_vertex_old::CartesianCuboidVoxel2Vertex
• prelude::cartesian_cuboid_n_old::CartesianCuboid1
• prelude::cartesian_cuboid_n_old::CartesianCuboid2
• prelude::cartesian_cuboid_n_old::CartesianCuboid3
• prelude::cartesian_cuboid_n_old::CartesianCuboidVoxel1
• prelude::cartesian_cuboid_n_old::CartesianCuboidVoxel2
• prelude::cartesian_cuboid_n_old::CartesianCuboidVoxel3
• prelude::pool_bacteria::Bacteria
• prelude::pool_bacteria::BacteriaCycle
• prelude::pool_bacteria::BacteriaReactions
• prelude::pool_bacteria::BacteriaTemplate
• prelude::pool_bacteria::GradientSensing
• prelude::storage::BatchSaveFormat
• prelude::storage::CombinedSaveFormat
• prelude::storage::JsonStorageInterface
• prelude::storage::MemoryStorageInterface
• prelude::storage::RonStorageInterface
• prelude::storage::SledStorageInterface
• prelude::storage::StorageBuilder
• prelude::storage::StorageManager
• prelude::storage::UniqueVec
• prelude::storage::XmlStorageInterface
• prelude::time::FixedStepsize
• prelude::time::NextTimePoint

Enums

• prelude::CycleEvent
• prelude::DecomposeError
• prelude::HandlingStrategy
• prelude::SimulationError
• prelude::StorageError
• prelude::StorageMode
• prelude::StorageOption
• prelude::TimeEvent
• prelude::backend::chili::CycleEvent
• prelude::backend::chili::DecomposeError
• prelude::backend::chili::HandlingStrategy
• prelude::backend::chili::SimulationError
• prelude::backend::chili::StorageError
• prelude::backend::cpu_os_threads::CycleEvent
• prelude::backend::cpu_os_threads::DecomposeError
• prelude::backend::cpu_os_threads::ImageType
• prelude::backend::cpu_os_threads::SimulationError
• prelude::backend::cpu_os_threads::domain_old::BoundaryCondition
• prelude::domain_old::BoundaryCondition
• prelude::pool_bacteria::Species
• prelude::storage::StorageError
• prelude::storage::StorageMode
• prelude::storage::StorageOption
• prelude::time::TimeEvent

Traits

• prelude::BuildFromGraph
• prelude::Communicator
• prelude::CreatePlottingRoot
• prelude::Cycle
• prelude::Domain
• prelude::DomainCreateSubDomains
• prelude::DomainRngSeed
• prelude::ErrorHandler
• prelude::FileBasedStorage
• prelude::FromMap
• prelude::Id
• prelude::Interaction
• prelude::Intracellular
• prelude::Mechanics
• prelude::PlotSelf
• prelude::Position
• prelude::Reactions
• prelude::ReactionsContact
• prelude::ReactionsExtra
• prelude::SortCells
• prelude::StorageInterface
• prelude::StorageInterfaceLoad
• prelude::StorageInterfaceOpen
• prelude::StorageInterfaceStore
• prelude::SubDomain
• prelude::SubDomainForce
• prelude::SubDomainMechanics
• prelude::SubDomainReactions
• prelude::SyncSubDomains
• prelude::TimeStepper
• prelude::UpdateCycle
• prelude::UpdateInteraction
• prelude::UpdateMechanics
• prelude::UpdateReactions
• prelude::UpdateReactionsContact
• prelude::Velocity
• prelude::Xapy
• prelude::backend::chili::BuildFromGraph
• prelude::backend::chili::Communicator
• prelude::backend::chili::ErrorHandler
• prelude::backend::chili::FromMap
• prelude::backend::chili::SyncSubDomains
• prelude::backend::chili::UpdateCycle
• prelude::backend::chili::UpdateInteraction
• prelude::backend::chili::UpdateMechanics
• prelude::backend::chili::UpdateReactions
• prelude::backend::chili::UpdateReactionsContact
• prelude::backend::chili::Xapy
• prelude::backend::cpu_os_threads::Agent
• prelude::backend::cpu_os_threads::CreatePlottingRoot
• prelude::backend::cpu_os_threads::Cycle
• prelude::backend::cpu_os_threads::Domain
• prelude::backend::cpu_os_threads::DomainCreateSubDomains
• prelude::backend::cpu_os_threads::DomainRngSeed
• prelude::backend::cpu_os_threads::ForceBound
• prelude::backend::cpu_os_threads::Id
• prelude::backend::cpu_os_threads::Interaction
• prelude::backend::cpu_os_threads::InteractionInformation
• prelude::backend::cpu_os_threads::Intracellular
• prelude::backend::cpu_os_threads::Mechanics
• prelude::backend::cpu_os_threads::PlotSelf
• prelude::backend::cpu_os_threads::Position
• prelude::backend::cpu_os_threads::PositionBound
• prelude::backend::cpu_os_threads::Reactions
• prelude::backend::cpu_os_threads::ReactionsContact
• prelude::backend::cpu_os_threads::ReactionsExtra
• prelude::backend::cpu_os_threads::SortCells
• prelude::backend::cpu_os_threads::SubDomain
• prelude::backend::cpu_os_threads::SubDomainForce
• prelude::backend::cpu_os_threads::SubDomainMechanics
• prelude::backend::cpu_os_threads::SubDomainReactions
• prelude::backend::cpu_os_threads::Velocity
• prelude::backend::cpu_os_threads::VelocityBound
• prelude::backend::cpu_os_threads::Xapy
• prelude::backend::cpu_os_threads::domain_old::Concentration
• prelude::backend::cpu_os_threads::domain_old::Controller
• prelude::backend::cpu_os_threads::domain_old::Domain
• prelude::backend::cpu_os_threads::domain_old::ExtracellularMechanics
• prelude::backend::cpu_os_threads::domain_old::Index
• prelude::backend::cpu_os_threads::domain_old::Voxel
• prelude::backend::cpu_os_threads::reactions_old::CellularReactions
• prelude::backend::cpu_os_threads::reactions_old::InteractionExtracellularGradient
• prelude::backend::cpu_os_threads::reactions_old::Volume
• prelude::domain_old::Concentration
• prelude::domain_old::Controller
• prelude::domain_old::Domain
• prelude::domain_old::ExtracellularMechanics
• prelude::domain_old::Index
• prelude::domain_old::Voxel
• prelude::reactions_old::CellularReactions
• prelude::reactions_old::InteractionExtracellularGradient
• prelude::reactions_old::Volume
• prelude::storage::FileBasedStorage
• prelude::storage::StorageInterface
• prelude::storage::StorageInterfaceLoad
• prelude::storage::StorageInterfaceOpen
• prelude::storage::StorageInterfaceStore
• prelude::time::TimeStepper

Macros

• prelude::backend::chili::build_aux_storage
• prelude::backend::chili::build_communicator
• prelude::backend::chili::communicator_generics_placeholders
• prelude::backend::chili::prepare_types
• prelude::backend::chili::run_main
• prelude::backend::chili::run_simulation
• prelude::backend::chili::run_test_for_aspects
• prelude::backend::chili::test_compatibility
• prelude::build_aux_storage
• prelude::build_communicator
• prelude::communicator_generics_placeholders
• prelude::prepare_types
• prelude::run_main
• prelude::run_simulation
• prelude::run_test_for_aspects
• prelude::test_compatibility

Derive Macros

• prelude::AuxStorage
• prelude::CellAgent
• prelude::Communicator
• prelude::Domain
• prelude::FromMap
• prelude::SubDomain
• prelude::backend::chili::AuxStorage
• prelude::backend::chili::Communicator
• prelude::backend::chili::FromMap
• prelude::backend::cpu_os_threads::CellAgent
• prelude::backend::cpu_os_threads::Domain
• prelude::backend::cpu_os_threads::SubDomain

Functions

• prelude::backend::chili::construct_simulation_runner
• prelude::backend::chili::local_cycle_update
• prelude::backend::chili::local_interaction_react_to_neighbors
• prelude::backend::chili::local_mechanics_update_step_3
• prelude::backend::chili::local_reactions_intracellular
• prelude::backend::chili::local_reactions_use_increment
• prelude::backend::chili::local_subdomain_update_reactions_extra
• prelude::backend::chili::local_update_contact_reactions_step_3
• prelude::backend::chili::mechanics_adams_bashforth_2
• prelude::backend::chili::mechanics_adams_bashforth_3
• prelude::backend::chili::mechanics_euler
• prelude::backend::chili::reactions_contact_adams_bashforth_3rd
• prelude::backend::chili::reactions_intracellular_runge_kutta_4th
• prelude::backend::chili::validate_map
• prelude::calculate_morse_interaction
• prelude::construct_simulation_runner
• prelude::local_cycle_update
• prelude::local_interaction_react_to_neighbors
• prelude::local_mechanics_update_step_3
• prelude::local_reactions_intracellular
• prelude::local_reactions_use_increment
• prelude::local_subdomain_update_reactions_extra
• prelude::local_update_contact_reactions_step_3
• prelude::mechanics_adams_bashforth_2
• prelude::mechanics_adams_bashforth_3
• prelude::mechanics_euler
• prelude::nearest_point_from_point_to_line
• prelude::nearest_point_from_point_to_multiple_lines
• prelude::ray_intersects_line_segment
• prelude::reactions_contact_adams_bashforth_3rd
• prelude::reactions_intracellular_runge_kutta_4th
• prelude::validate_map
• prelude::wiener_process

Type Aliases

• prelude::CellularIdentifier
• prelude::Nothing
• prelude::backend::cpu_os_threads::CellularIdentifier
• prelude::backend::cpu_os_threads::PlainIndex
• prelude::pool_bacteria::ReactionVector

Constants

• prelude::pool_bacteria::NUMBER_OF_REACTION_COMPONENTS