Struct BacteriaCycle

pub struct BacteriaCycle {
    pub volume_division_threshold: f64,
    pub lag_phase_transition_rate_1: f64,
    pub lag_phase_transition_rate_2: f64,
}

Implementation of the cellular_raza_concepts::Cycle trait for the Bacteria struct

Fields

volume_division_threshold: f64

Threshold for the volume when the cell should divide

lag_phase_transition_rate_1: f64

lag_phase_transition_rate_2: f64

Implementations

impl BacteriaCycle

pub fn new( volume_division_threshold: f64, lag_phase_transition_rate_1: f64, lag_phase_transition_rate_2: f64, ) -> BacteriaCycle

Available on crate feature cpu_os_threads only.

pub fn default() -> BacteriaCycle

Available on crate feature cpu_os_threads only.

Construct the default BacteriaCycle by using default values

Trait Implementations

impl Clone for BacteriaCycle

fn clone(&self) -> BacteriaCycle

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Cycle<Bacteria> for BacteriaCycle

fn update_cycle( rng: &mut ChaCha8Rng, dt: &f64, cell: &mut Bacteria, ) -> Option<CycleEvent>

Continuously updates cellular properties and may spawn a CycleEvent which then calls the corresponding functions (see also CycleEvent).

fn divide( rng: &mut ChaCha8Rng, c1: &mut Bacteria, ) -> Result<Bacteria, DivisionError>

Performs division of the cell by modifying the existing one and spawning an additional cell. The user is responsible for correctly adjusting cell-specific values such as intracellular concentrations or position of the two resulting cells. Corresponds to CycleEvent::Division.

fn update_conditional_phased_death( rng: &mut ChaCha8Rng, dt: &Float, cell: &mut Cell, ) -> Result<bool, DeathError>

Method corresponding to the CycleEvent::PhasedDeath event. Update the cell while returning a boolean which indicates if the updating procedure has finished. As soon as the return value is true the cell is removed.

impl Debug for BacteriaCycle

fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for BacteriaCycle

fn deserialize<__D>( __deserializer: __D, ) -> Result<BacteriaCycle, <__D as Deserializer<'de>>::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl<'py> IntoPyObject<'py> for BacteriaCycle

type Target = BacteriaCycle

The Python output type

type Output = Bound<'py, <BacteriaCycle as IntoPyObject<'py>>::Target>

The smart pointer type to use.

type Error = PyErr

The type returned in the event of a conversion error.

fn into_pyobject( self, py: Python<'py>, ) -> Result<<BacteriaCycle as IntoPyObject<'py>>::Output, <BacteriaCycle as IntoPyObject<'py>>::Error>

Performs the conversion.

impl PyClass for BacteriaCycle

type Frozen = False

Whether the pyclass is frozen.

impl PyTypeInfo for BacteriaCycle

const NAME: &'static str = "BacteriaCycle"

Class name.

const MODULE: Option<&'static str> = ::core::option::Option::None

Module name, if any.

fn type_object_raw(py: Python<'_>) -> *mut PyTypeObject

Returns the PyTypeObject instance for this type.

fn type_object(py: Python<'_>) -> Bound<'_, PyType>

Returns the safe abstraction over the type object.

fn is_type_of(object: &Bound<'_, PyAny>) -> bool

Checks if object is an instance of this type or a subclass of this type.

fn is_exact_type_of(object: &Bound<'_, PyAny>) -> bool

Checks if object is an instance of this type.

impl Serialize for BacteriaCycle

fn serialize<__S>( &self, __serializer: __S, ) -> Result<<__S as Serializer>::Ok, <__S as Serializer>::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl DerefToPyAny for BacteriaCycle