⎇ Releases

⎇ Releases

To this date, version numbers do not follow the semver specification. We are working towards this goal and will report our progress.

cellular_raza 0.1.4

9th November 2024

cellular_raza 0.1.3

26th October 2024

  • Bugfix for assigning correct CellIdentifier for parent cell
  • Version 0.1.2 was yanked due to incorrect bugfix attempt

cellular_raza 0.1.1

18th October 2024

  • Adapt some tests and plotting of them
  • cleanup module structure for time and some tests
  • More detailed descriptions of concepts
  • New formulation of MorsePotential
  • Corrected bugs in the Langevin mechanics model
  • Abstract Bacterial Rods example into building blocks
  • Start new subproject cr_mech_coli to build mechanistic, mechanical E.Coli model
  • Changed how identifiers will be updated after division: both cells will now receive new identifiers, in the future we want to extend this to arbitrary numbers in order to support multiple fission
  • Removed unused cellular_raza-building_blocks::prelude

cellular_raza 0.1.0

28th August 2024 🎉 2 Year Anniversary 🎉

  • Changed calculation of random contribution in Mechanics trait
    • Improved stochastic motion testing for Brownian and Langevin dynamics
  • Derive macros now support tuple structs
  • Implemented extracellular reactions
    • First example: bacterial branching
  • Add rayon as parallelization scheme
  • Improved error handling
    • properly wind down simulation after encountering error
    • First experimentation with error handlers
  • Rename some trait functions and variables from neighbour to neighbor

Pre-0.1 Releases

cellular_raza 0.0.13

30th July 2024

  • Advanced testing for contact reactions and solvers
  • Added Ron storage option
  • Restructured and simplified storage solutions
  • Improve (but also change parameters) CLI for benchmarks
  • Use new circ_buffer crate in chili backend
  • Bugfixes for contact reactions
  • Move homepage to separate repository
  • New function to create timestepper from_partial_save_freq
  • Update nalgebra to version “0.33”

cellular_raza 0.0.12

13th July 2024

  • Implement concepts for contact reactions
  • Add option to enable/disable determinism
  • Correct some bugs and implement functionality for storage solutions

cellular_raza 0.0.11

18th June 2024

cellular_raza 0.0.10

11th June 2024

  • Change Interaction concept to return two force values for own and other cell.
  • Fix some bugs in chili backend (mainly related to Cycle concept)
  • migrate some examples from old cpu_os_threads to new chili backend
  • Change VertexDerivedInteraction to use closest point on external polygon

cellular_raza 0.0.9

1st June 2024

  • Major improvements to the chili backend
    • Stabilize main routines and macros
    • Tested workflow with actual examples
  • Stabilize new domain traits
  • Added more examples
  • Developed approx-derive crate to more easily test approximate results for complex datatypes.
ℹ️
From now on releases will become more frequent and for smaller feature additions such that version 0.1.0 can be reached sooner.

cellular_raza 0.0.8

16th February 2024

  • Added documentation where needed
  • Fix public interface for cpu_os_threads backend
  • Compared to 0.0.7 this new version will almost only fix Documentation and dependencies for the nightly compiler

cellular_raza 0.0.7

16th February 2024

  • More experimenting with trait for fluid dynamics
  • Improved documentation and website
  • Only minor advancements in backend development

cellular_raza 0.0.6

2nd February 2024 Further development of chili backend:

  • Extend documentation and development of the chili backend
  • Template simulation contains raw experimentation with this new backend
  • Mechanics and Interaction trait working
  • Concise API for running simulations still missing
  • Proc-macro crate has been expanded with many useful helper macros
  • Next version might contain a first working iteration of the chili backend

cellular_raza 0.0.5

12th December 2023

  • Include some pyo3 fixes (prevented from compiling in 0.0.4)

cellular_raza 0.0.4

6th December 2023

  • Add readme files
  • Minor bugfix for pyo3 binding generation in building blocks

cellular_raza 0.0.3

6th March 2023

cellular_raza 0.0.2

22nd February 2023

cellular_raza 0.0.1

13th December 2023

initial commit

27th August 2022