CITATION.cff                                       |   2 +-
 Cargo.toml                                         |   4 +-
 cellular_raza-benchmarks/Cargo.toml                |   2 +-
 cellular_raza-building-blocks/Cargo.toml           |   2 +-
 .../src/cell_building_blocks/bacterial_rods.rs     |   2 +-
 .../src/cell_building_blocks/cycle.rs              |   4 +-
 .../src/cell_building_blocks/interaction.rs        |   4 +-
 .../src/domains/cartesian_cuboid_2_vertex_old.rs   |   2 +-
 .../src/domains/cartesian_cuboid_n.rs              |   4 +-
 cellular_raza-concepts-derive/src/cell_agent.rs    |   2 +-
 cellular_raza-concepts/Cargo.toml                  |   2 +-
 cellular_raza-concepts/src/domain_old.rs           |   2 +-
 cellular_raza-core-proc-macro/src/run_sim.rs       |   2 +-
 cellular_raza-core/Cargo.toml                      |   6 +-
 cellular_raza-core/src/backend/chili/errors.rs     |   6 +-
 cellular_raza-core/src/backend/chili/mod.rs        |   5 +
 cellular_raza-core/src/backend/chili/solvers.rs    |   2 +-
 .../src/backend/chili/update_mechanics.rs          |  15 +-
 .../src/backend/chili/update_reactions.rs          |  34 +-
 .../src/backend/cpu_os_threads/config.rs           |  32 +-
 .../backend/cpu_os_threads/domain_decomposition.rs | 151 ++++----
 .../src/backend/cpu_os_threads/supervisor.rs       |  52 +--
 cellular_raza-core/src/storage/concepts.rs         |  19 +-
 cellular_raza-core/src/storage/sled_database.rs    |  87 ++++-
 .../bacterial_branching/Cargo.toml                 |   1 +
 .../bacterial_branching/src/bacteria_properties.rs | 406 ++-------------------
 .../bacterial_branching/src/main.rs                | 220 ++++++++---
 .../bacterial_branching/src/plotting.py            | 117 +++---
 .../bacterial_branching/src/subdomain.rs           | 393 ++++++++++++++++++++
 cellular_raza-examples/cellular_raza-template-pyo3 |   2 +-
 cellular_raza/Cargo.toml                           |   6 +-
 .../tests/determinism_mechanics_interaction.rs     |   8 +-
 .../tests/interaction_two_body_problem.rs          |   2 +-
 cellular_raza/tests/storage.rs                     |   2 +-
 update_version.sh                                  |   4 +-
 35 files changed, 920 insertions(+), 684 deletions(-)